Basic Information
Locus ID:
CQ.Regalona.r1.6BG0027700
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 86209495 | 86215141 | + | CQ.Regalona.r1.6BG0027700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 57,252.85 Da | 52.18 | 79.28 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 75 | 160 | 2.4E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 232 | 288 | 4.9E-5 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 73 | 160 | 1.36E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 71 | 175 | 7.6E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 77 | 169 | 1.5E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 246 | 315 | 15.187819 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 77 | 141 | 11.564283 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49900.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021714461.1 | BTB/POZ domain-containing protein At3g49900-like [Chenopodium quinoa] | 0 |
| Q9M2W8 | BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana OX=3702 GN=At3g49900 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KY94 | NPH3 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19637, jg30719 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23999 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027532 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13170, Sbi_jg52672 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9179 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010108 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34596, Sgl40012 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000003441 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026280, CQ.Regalona.r1.6BG0027700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205080 |
| Apiaceae | Apium graveolens | 2 | Ag5G00336, Ag6G00179 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705308 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1230.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G00160 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49900.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010291m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g047690.2N, BniB08g063800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1430 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1431 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01750 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32310, gene.Thate08g15370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2564 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023792 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3543, BH03.3760, CH03.3974 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574990, gene-QOZ80_7BG0606350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0129660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039982, gene-QYE76_040019 |
| Poaceae | Oryza coarctata | 2 | Oco13G011400, Oco14G012150 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G333800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304676 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G020770, Chr19G003200, Chr24G011450, Chr27G014020 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G358200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024730, gene_TRIDC2BG028320 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192800.1, TraesCS2B02G213700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb326040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32813, nbis-gene-536 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5465, Zma_g6747 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.80, evm.TU.LG25.1252 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g06770, gene.Posoc02g22900, gene.Posoc03g25820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1785 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17370 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11980 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1086 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15444 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3298 |
| Salicaceae | Populus euphratica | 2 | populus_peu29848, populus_peu29854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623408 |
| Solanaceae | Solanum chilense | 1 | SOLCI004236400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009061 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4482_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1923 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04020.v3.1 |