Basic Information
Locus ID:
CQ.Regalona.r1.6BG0026830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 85117657 | 85119726 | + | CQ.Regalona.r1.6BG0026830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 54,819.49 Da | 46.00 | 75.44 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09212 | PUB | 205 | 282 | 1.77224E-22 | - |
| Pfam | PF09409 | PUB domain | 204 | 279 | 1.7E-18 | IPR018997 |
| Pfam | PF00789 | UBX domain | 385 | 437 | 1.3E-6 | IPR001012 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 202 | 280 | 7.06E-18 | IPR036339 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 354 | 468 | 4.91E-14 | IPR029071 |
| Gene3D | G3DSA:1.20.58.2190 | - | 198 | 285 | 5.8E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 378 | 471 | 3.3E-7 | - |
| SMART | SM00580 | PGNneu | 204 | 271 | 1.6E-19 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 384 | 468 | 13.255021 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01650.1 | plant UBX domain-containing protein 2. encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. | 0 |
| RefSeq | XP_021714355.1 | plant UBX domain-containing protein 2-like [Chenopodium quinoa] | 0 |
| Q9ZU93 | Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY06 | UBX domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5144, jg7358, jg7359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027416 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127220 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13056, Sbi_jg13064, Sbi_jg52822 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg9053, Seu_jg9059 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010196 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33909, Sgl39276 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003613, gene:ENSEOMG00000027998 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025310, CQ.Regalona.r1.6BG0026830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218070 |
| Apiaceae | Apium graveolens | 1 | AgUnG01076 |
| Arecaceae | Cocos nucifera | 1 | scaffold001332G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717028 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1400.V1.1, AsparagusV1_06.513.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G05668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004151m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g13100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g064940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0836 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0908 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04790, gene.Cymno09g02650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0652s00010.v1.0, Dusal.1189s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g24150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1285 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033232 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01428 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1861, BH03.2063, CH03.2211 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534690, gene-QOZ80_6BG0487870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0479200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005022, gene-QYE76_016472 |
| Poaceae | Oryza coarctata | 2 | Oco17G004420, Oco18G004420 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g43570.1, LOC_Os09g23690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G178100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702272 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010450, Chr14G013520, Chr21G012710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G340700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG033040, gene_TRIDC5BG034910 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G204800.1, TraesCS5D02G211300.1 |
| Poaceae | Zea mays | 2 | Zm00001eb099250_P001, Zm00001eb312180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30285 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.225, evm.TU.LG04.1036, evm.TU.LG05.1221 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.773 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8226 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20043 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.426 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004431 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10821 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14266 |
| Salicaceae | Populus euphratica | 1 | populus_peu07205 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625875 |
| Solanaceae | Solanum chilense | 1 | SOLCI002207400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010276 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10204 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2214 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09890.v3.1 |