Basic Information
Locus ID:
CQ.Regalona.r1.6BG0026820
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 85053094 | 85102698 | + | CQ.Regalona.r1.6BG0026820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 485,922.03 Da | 43.63 | 90.43 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2735 | 2819 | 0.00159609 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 114 | 2.5E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2098 | 2254 | 1.4E-12 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 171 | 415 | 6.9E-68 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2335 | 2478 | 1.0E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 693 | 893 | 1.6E-27 | IPR031642 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4246 | 4273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3621 | 3642 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_021714354.1 | uncharacterized protein LOC110682332 isoform X6 [Chenopodium quinoa] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology