Basic Information
Locus ID:
CQ.Regalona.r1.6BG0026480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 84624670 | 84631470 | + | CQ.Regalona.r1.6BG0026480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 89,843.51 Da | 35.56 | 81.24 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 346 | 402 | 1.69664E-31 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 347 | 402 | 8.8E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 95 | 194 | 4.8E-8 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 411 | 769 | 9.3E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 333 | 403 | 3.23E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 241 | 771 | 2.06E-73 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 565 | 738 | 1.9E-233 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 244 | 789 | 1.9E-233 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 28 | 187 | 1.1E-39 | IPR043151 |
| SMART | SM00298 | chromo_7 | 346 | 405 | 3.5E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 89 | 203 | 1.5E-5 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 242 | 779 | 41.552937 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 89 | 203 | 16.757236 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 347 | 400 | 12.086901 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 243 | 259 | 8.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 460 | 474 | 8.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 506 | 519 | 8.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 343 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_021714306.1 | DNA (cytosine-5)-methyltransferase 1-like [Chenopodium quinoa] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KXW9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology