Basic Information
Locus ID:
CQ.Regalona.r1.6BG0024640
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 82593120 | 82597724 | + | CQ.Regalona.r1.6BG0024640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 16,706.83 Da | 37.36 | 80.00 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 7 | 75 | 5.7E-7 | IPR032799 |
| SUPERFAMILY | SSF50630 | Acid proteases | 7 | 83 | 3.25E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1 | 80 | 3.3E-13 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 1 | 75 | 12.326554 | IPR033121 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35880.1 | Eukaryotic aspartyl protease family protein. | 0 |
| RefSeq | XP_021714047.1 | aspartyl protease family protein 1-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8VYV9 | Aspartyl protease family protein 1 OS=Arabidopsis thaliana OX=3702 GN=APF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KXD9 | Peptidase A1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 18 | Sgl04409, Sgl04410, Sgl04816, Sgl09479, Sgl09480, Sgl21236 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027573 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0024640 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602718 |
| Poaceae | Zea mays | 2 | Zm00001eb026340_P001, Zm00001eb305040_P001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2454 |