Basic Information
Locus ID:
CQ.Regalona.r1.6BG0023260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DDB1- and CUL4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 81218927 | 81238201 | - | CQ.Regalona.r1.6BG0023260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 83,203.29 Da | 42.63 | 84.00 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01863 | Rab18 | 557 | 718 | 6.55513E-105 | - |
| Pfam | PF00071 | Ras family | 558 | 719 | 3.5E-55 | IPR001806 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 486 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 552 | 722 | 1.38E-56 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 286 | 623 | 5.5E-15 | IPR036322 |
| Gene3D | G3DSA:3.40.50.300 | - | 550 | 752 | 2.1E-64 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 240 | 522 | 8.4E-11 | IPR015943 |
| SMART | SM00177 | arf_sub_2 | 535 | 722 | 0.0013 | - |
| SMART | SM00320 | WD40_4 | 291 | 330 | 180.0 | IPR001680 |
| SMART | SM00175 | rab_sub_5 | 557 | 721 | 3.2E-99 | - |
| SMART | SM00320 | WD40_4 | 445 | 486 | 0.0022 | IPR001680 |
| SMART | SM00173 | ras_sub_4 | 554 | 721 | 7.7E-33 | - |
| SMART | SM00176 | ran_sub_2 | 562 | 748 | 2.3E-5 | - |
| SMART | SM00174 | rho_sub_3 | 559 | 721 | 2.2E-14 | IPR001806 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 555 | 713 | 1.8E-28 | IPR005225 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 548 | 752 | 18.548578 | IPR001806 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 550 | 719 | 9.603104 | - |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 552 | 752 | 33.140671 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 452 | 491 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 495 | 11.377324 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 597 | 619 | 8.0E-35 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 661 | 674 | 8.0E-35 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 579 | 595 | 8.0E-35 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 557 | 578 | 8.0E-35 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 696 | 718 | 8.0E-35 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43890.1 | RAB GTPASE HOMOLOG B18. ras-related small GTPase | 0 |
| RefSeq | XP_021713871.1 | uncharacterized protein LOC110681982 [Chenopodium quinoa] | 0 |
| O23657 | Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KX13 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20939 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25250 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027100 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13446, Sbi_jg52421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9429 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013432 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33764, Sgl39076 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001895, gene:ENSEOMG00000002384 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022100, CQ.Regalona.r1.6BG0023260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30221000 |
| Apiaceae | Apium graveolens | 8 | Ag9G02454, Ag9G02455, Ag9G02535, Ag9G02536, Ag9G02542 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696415 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3821.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17383 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G17370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015915m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g26850.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g046480.2N, BniB07g020860.2N, BniB08g008640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0021 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04480 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.299 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012890 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24847 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.43, BH03.48, CH03.68 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0552260, gene-QOZ80_7BG0583290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0156710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043178 |
| Poaceae | Oryza coarctata | 1 | Oco13G000330 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G004000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303351, Pt_Chr0303411 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002610, Chr28G000280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G478000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG037110, gene_TRIDC2BG040680 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G261800.1, TraesCS2B02G280400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb298410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52674 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2889, evm.TU.LG23.1084 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1045 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13452 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5338 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9269 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.294 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003865 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7664 |
| Salicaceae | Populus euphratica | 1 | populus_peu03837 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621424 |
| Solanaceae | Solanum chilense | 1 | SOLCI003708700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031141 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10715 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0966 |
| Zosteraceae | Zostera marina | 1 | Zosma02g05430.v3.1 |