Basic Information
Locus ID:
CQ.Regalona.r1.6BG0021750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 79655940 | 79664557 | + | CQ.Regalona.r1.6BG0021750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 84,080.58 Da | 47.27 | 93.97 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 675 | 716 | 4.73074E-22 | - |
| CDD | cd01989 | STK_N | 6 | 160 | 1.62605E-32 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 396 | 588 | 2.5E-32 | IPR001245 |
| Pfam | PF04564 | U-box domain | 671 | 742 | 1.6E-17 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 140 | 3.27E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 668 | 742 | 4.94E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 368 | 639 | 6.88E-54 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 669 | 742 | 3.0E-27 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 462 | 4.1E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 463 | 660 | 2.9E-37 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 5 | 158 | 3.2E-5 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 674 | 737 | 1.6E-24 | IPR003613 |
| SMART | SM00220 | serkin_6 | 390 | 641 | 1.6E-13 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 670 | 744 | 33.06699 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 390 | 653 | 27.580393 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 508 | 520 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 254 | - | - |
| Coils | Coil | Coil | 265 | 285 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021713650.1 | U-box domain-containing protein 33-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KWM1 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology