Basic Information
Locus ID:
CQ.Regalona.r1.6BG0020220
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 78039894 | 78047004 | + | CQ.Regalona.r1.6BG0020220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 89,771.66 Da | 54.07 | 69.27 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 72 | 109 | 9.6E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 377 | 673 | 8.4E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 374 | 677 | 6.67E-80 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 67 | 111 | 9.07E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 58 | 113 | 1.6E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 370 | 688 | 2.6E-85 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 377 | 676 | 47.341801 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 72 | 109 | 11.896499 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 378 | 393 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 72 | 109 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 255 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021758930.1 | ubiquitin carboxyl-terminal hydrolase 17-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KW81 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology