Basic Information
Locus ID:
CQ.Regalona.r1.6BG0018160
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 75459188 | 75470042 | - | CQ.Regalona.r1.6BG0018160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 159,280.02 Da | 38.95 | 94.57 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 507 | 529 | 0.022 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 370 | 411 | 1.7E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 580 | 639 | 2.0E-7 | IPR001611 |
| Pfam | PF00646 | F-box domain | 1088 | 1118 | 4.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1087 | 1118 | 4.71E-7 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 368 | 685 | 3.06E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 702 | 783 | 3.17E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 947 | 1014 | 7.0E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 462 | 808 | 6.6E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 445 | 3.8E-7 | IPR032675 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1154 | 1339 | 3.3E-15 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 179 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_021756718.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Chenopodium quinoa] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KVN7 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16224, gene_16225, gene_3309 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah018628, Ah018636, Ah026408, Ah034286 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035230, BVRB_2g035240, BVRB_3g052040, BVRB_7g158190 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg13919, Sbi_jg15090, Sbi_jg15094, Sbi_jg52019 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg26400, Seu_jg26406, Seu_jg9833 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020055, GOSA_00020064, GOSA_00022519 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl01329, Sgl01345, Sgl01359, Sgl06422, Sgl06435, Sgl06515 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015046, gene:ENSEOMG00000031880 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0004970, CQ.Regalona.r1.3BG0005000 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1531, evm.TU.LG01.1541, evm.TU.LG14.787 ... |