Basic Information
Locus ID:
CQ.Regalona.r1.6BG0017520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Splicing factor 3B subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 74545134 | 74550935 | - | CQ.Regalona.r1.6BG0017520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 142,439.91 Da | 44.62 | 90.99 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08920 | Splicing factor 3B subunit 1 | 292 | 421 | 1.6E-44 | IPR015016 |
| SUPERFAMILY | SSF48371 | ARM repeat | 471 | 1263 | 9.31E-102 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 460 | 797 | 7.4E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 1096 | 1262 | 2.6E-6 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 798 | 1095 | 1.5E-31 | IPR011989 |
| SMART | SM01349 | TOG_3 | 854 | 1088 | 0.005 | IPR034085 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 173 | - | - |
| Coils | Coil | Coil | 8 | 28 | - | - |
| Coils | Coil | Coil | 141 | 175 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64270.1 | splicing factor, putative. | 0 |
| RefSeq | XP_021756066.1 | splicing factor 3B subunit 1-like [Chenopodium quinoa] | 0 |
| O75533 | Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803KYX6 | TOG domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15778, jg4177 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7973 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000375 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg31943, Sbi_jg31944, Sbi_jg4354, Sbi_jg49473 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25111, Seu_jg5769 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000315, GOSA_00023166 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11243, Sgl16637 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002037, gene:ENSEOMG00000026694 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0006070, CQ.Regalona.r1.2BG0023660 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253660 |
| Apiaceae | Apium graveolens | 1 | Ag8G02178 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019470, COCNU_03G004200, contig69146665G000010 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2349.V1.1, AsparagusV1_05.2350.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G24362 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64270.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005618m.g.v1.0, Thhalv10024248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g012480.2N, BniB07g042710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2000 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2149 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0322s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g16860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.197 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00006030, Pov_00021600, Pov_00038563, Pov_00038564 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18256, Lb3G18257 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.358, BH07.466, CH03.4464 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027810, gene-QOZ80_1BG0077990 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0558450.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_020347, gene-QYE76_020348, gene-QYE76_046287 ... |
| Poaceae | Oryza coarctata | 2 | Oco03G002360, Oco04G002280 |
| Poaceae | Oryza sativa | 4 | LOC_Os02g04950.1, LOC_Os02g05310.4, LOC_Os02g05410.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G036300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107745, Pt_Ctg00106 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G013460, Chr03G012960, Chr05G020280, Chr08G013210 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G727000, Tel5E01G048400, Tel5E01G048500 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG002670, gene_TRIDC6AG015290 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5B02G017300.1.cds1, TraesCS5D02G025300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb208060_P001, Zm00001eb232170_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-26019, nbis-gene-51725, nbis-gene-51726 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10830, Zma_g8387, Zma_g8388, Zma_g8389 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2144, evm.TU.LG14.1320 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1012, evm.TU.Scaffold_2_RagTag.1295 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3978, nbisL1-mrna-6601 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14167, nbisL1-mrna-17492 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-18721, nbisL1-mrna-18722, nbisL1-mrna-21191 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.155, add.evm.TU.utg000016l.377 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004935, Maker00016590 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-21153, nbisL1-mrna-21154, nbisL1-mrna-21736 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23197 |
| Salicaceae | Populus euphratica | 2 | populus_peu01412, populus_peu24194 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607318 |
| Solanaceae | Solanum chilense | 1 | SOLCI000035100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002044 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21849_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2045 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17360.v3.1 |