Basic Information
Locus ID:
CQ.Regalona.r1.6BG0016490
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 72740436 | 72740933 | - | CQ.Regalona.r1.6BG0016490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 18,324.51 Da | 29.89 | 86.42 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 87 | 148 | 6.80172E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 71 | 1.2E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 86 | 148 | 1.2E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 150 | 2.78E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 105 | 157 | 5.0E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 104 | 3.2E-28 | - |
| SMART | SM00054 | efh_1 | 47 | 75 | 1.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 87 | 115 | 7.9E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.0067 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 151 | 1.3E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 13.899706 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 14.401823 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.022245 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 83 | 118 | 14.48551 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 96 | 108 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021755251.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QEY9 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_186650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology