Basic Information
Locus ID:
CQ.Regalona.r1.6BG0016430
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 72575340 | 72582407 | - | CQ.Regalona.r1.6BG0016430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 51,107.56 Da | 46.71 | 114.66 | 0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 26 | 441 | 1.32311E-55 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 69 | 402 | 4.2E-24 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 69 | 447 | 1.29E-36 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 55 | 442 | 7.6E-37 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 448 | 14.759118 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 84 | 100 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021755148.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| P51563 | Tetracycline resistance protein, class G OS=Vibrio anguillarum OX=55601 GN=tetA PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KV97 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology