Basic Information
Locus ID:
CQ.Regalona.r1.6BG0015510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 70728583 | 70734390 | + | CQ.Regalona.r1.6BG0015510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 43,756.36 Da | 53.30 | 81.81 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 73 | 108 | 1.5E-8 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 291 | 346 | 9.3E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 374 | 407 | 4.0E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 186 | 223 | 2.3E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 288 | 350 | 6.02E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 353 | 413 | 1.56E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 65 | 110 | 6.06E-7 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 172 | 229 | 4.3E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 178 | 228 | 1.7E-18 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 364 | 412 | 1.6E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 281 | 346 | 7.3E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 64 | 111 | 2.0E-11 | - |
| SMART | SM00727 | CBM | 289 | 332 | 2.1E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 185 | 225 | 0.0069 | IPR015940 |
| SMART | SM00165 | uba_6 | 372 | 409 | 9.9E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 70 | 110 | 0.26 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 118 | 413 | 6.5E-74 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 369 | 410 | 13.751749 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 183 | 226 | 13.269807 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 68 | 111 | 10.66732 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 317 | 339 | 6.3E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 397 | 6.3E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 366 | 382 | 6.3E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 398 | 413 | 6.3E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 266 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754087.1 | ubiquitin receptor RAD23d-like isoform X2 [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KV23 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology