Basic Information
Locus ID:
CQ.Regalona.r1.6BG0015490
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 70703992 | 70705396 | + | CQ.Regalona.r1.6BG0015490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 11,676.69 Da | 35.97 | 111.44 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 34 | 87 | 9.4E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 34 | 95 | 8.52E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 90 | 2.7E-18 | - |
| SMART | SM00213 | ubq_7 | 13 | 86 | 5.3E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 34 | 90 | 13.053562 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754102.1 | ubiquitin receptor RAD23d-like isoform X4 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7B395 | Ubiquitin-like domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_032029 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology