Basic Information
Locus ID:
CQ.Regalona.r1.6BG0014380
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
elongator complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 66867251 | 66880816 | - | CQ.Regalona.r1.6BG0014380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 91,746.35 Da | 36.25 | 88.83 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 713 | 6.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 341 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 146 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 436 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 96 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 256 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 579 | 830 | 6.02E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 20 | 436 | 1.19E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 571 | 673 | 1.3E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 285 | 3.3E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 674 | 834 | 2.0E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 403 | 506 | 6.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 286 | 402 | 1.6E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 104 | 147 | 0.088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 674 | 713 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 341 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 437 | 0.0072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 779 | 828 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 622 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 719 | 763 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 97 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 625 | 664 | 9.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 256 | 6.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 257 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 632 | 666 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 148 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 681 | 722 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 681 | 714 | 9.99469 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 700 | 714 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 243 | 257 | 5.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 134 | 148 | 5.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_021752940.1 | elongator complex protein 2-like [Chenopodium quinoa] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU8 | Elongator complex protein 2 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5217, jg5231 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4074 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025578, Ah026006, Ah026010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12863, Sbi_jg53008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027768 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33131, Sgl38383 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001994, gene:ENSEOMG00000002926 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013230, CQ.Regalona.r1.6BG0014380 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30215110, pistato.v30215540 |
| Apiaceae | Apium graveolens | 1 | Ag6G00526 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1112.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36390.v2.2, Sp1g36410.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g061070.2N, BniB07g006270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2242 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0657s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019163, Pov_00040828 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05770, Lb5G27517 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1919, BH08.2010, CH08.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0635580, gene-QOZ80_8BG0664380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018631 |
| Poaceae | Oryza coarctata | 1 | Oco15G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g38570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G175600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G000360, Chr29G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015670, gene_TRIDC1BG016900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G104700.1, TraesCS1B02G116100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47610 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1898, evm.TU.LG14.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.126 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15623, nbisL1-mrna-2951 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17460 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004689 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2808 |
| Salicaceae | Populus euphratica | 3 | populus_peu07105, populus_peu21078, populus_peu21079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605667, gene-LOC132606061 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022021 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16745_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11250.v3.1 |