Basic Information
Locus ID:
CQ.Regalona.r1.6BG0014320
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 66697895 | 66708283 | + | CQ.Regalona.r1.6BG0014320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 146,835.89 Da | 37.39 | 109.36 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1064 | 1284 | 1.07086E-118 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 748 | 1041 | 6.88027E-87 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 128 | 423 | 4.32929E-83 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 449 | 651 | 6.39902E-114 | - |
| Pfam | PF00005 | ABC transporter | 469 | 603 | 3.6E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 130 | 402 | 1.9E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1083 | 1231 | 1.2E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 749 | 998 | 8.5E-33 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 117 | 427 | 5.62E-25 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 747 | 1048 | 2.62E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1058 | 1291 | 1.43E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 445 | 675 | 6.74E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1049 | 1302 | 4.9E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 116 | 430 | 5.8E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 714 | 1047 | 2.5E-63 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 441 | 699 | 7.9E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 478 | 651 | 6.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1092 | 1284 | 1.3E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 749 | 1029 | 39.879963 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 127 | 415 | 26.798332 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1068 | 1300 | 17.713884 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 449 | 674 | 22.008915 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 576 | 590 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021752684.1 | ABC transporter C family member 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology