Basic Information
Locus ID:
CQ.Regalona.r1.6BG0013600
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 63752811 | 63765876 | + | CQ.Regalona.r1.6BG0013600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 19,865.87 Da | 38.17 | 87.08 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 11 | 178 | 2.2E-47 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 7 | 177 | 5.27E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2 | 178 | 3.2E-69 | IPR027417 |
| SMART | SM00487 | ultradead3 | 6 | 178 | 2.3E-41 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 18 | 178 | 27.969193 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 138 | 146 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021733054.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MUF8 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology