Basic Information
Locus ID:
CQ.Regalona.r1.6BG0009560
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 22155956 | 22175837 | - | CQ.Regalona.r1.6BG0009560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 115,263.96 Da | 37.20 | 80.34 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 321 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 903 | 1009 | 1.7E-11 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 358 | 3.2E-92 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 453 | 1.6E-21 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 606 | 821 | 2.6E-47 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 362 | 456 | 4.25E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 34 | 359 | 1.67E-106 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 465 | 1013 | 5.34E-137 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 327 | 405 | 6.4E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 463 | 4.4E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 473 | 584 | 1.1E-28 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 889 | 1019 | 9.2E-33 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 869 | 9.1E-93 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 326 | 1.0E-120 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 2.2E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021736050.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MZJ0 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology