Basic Information
Locus ID:
CQ.Regalona.r1.6BG0008480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 16772094 | 16779766 | + | CQ.Regalona.r1.6BG0008480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 77,027.92 Da | 26.47 | 79.93 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 55 | 335 | 6.44208E-77 | - |
| CDD | cd10317 | RGL4_C | 483 | 671 | 2.85788E-48 | - |
| CDD | cd10316 | RGL4_M | 375 | 470 | 7.72938E-33 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 398 | 467 | 5.3E-22 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 481 | 670 | 3.5E-50 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 54 | 244 | 2.6E-64 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 372 | 468 | 1.53E-11 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 57 | 335 | 4.39E-10 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 479 | 671 | 2.64E-44 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 478 | 671 | 1.4E-16 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 55 | 341 | 4.1E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 372 | 469 | 1.6E-11 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021747733.1 | uncharacterized protein LOC110713592 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBF3 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology