Basic Information
Locus ID:
CQ.Regalona.r1.6BG0008460
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 16752506 | 16756787 | + | CQ.Regalona.r1.6BG0008460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 71,850.00 Da | 35.63 | 75.94 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 427 | 615 | 9.14715E-53 | - |
| CDD | cd10316 | RGL4_M | 332 | 407 | 5.92312E-22 | IPR029413 |
| CDD | cd10320 | RGL4_N | 15 | 294 | 1.84627E-71 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 425 | 613 | 1.2E-51 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 356 | 409 | 2.5E-15 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 14 | 201 | 2.1E-69 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 422 | 615 | 2.55E-47 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 17 | 299 | 3.11E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 372 | 409 | 9.22E-5 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 13 | 303 | 1.5E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 423 | 615 | 2.8E-17 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021747845.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology