Basic Information
Locus ID:
CQ.Regalona.r1.6BG0007910
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 13408290 | 13414638 | - | CQ.Regalona.r1.6BG0007910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 50,072.34 Da | 49.98 | 61.84 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 456 | - | - |
| Coils | Coil | Coil | 292 | 312 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27090.1 | glycine-rich protein. | 0 |
| RefSeq | XP_021747988.1 | heterogeneous nuclear ribonucleoprotein A3 homolog 1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBJ9 | Caprin-1_dimer domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg5444, jg7087, jg9384, jg9385 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3724 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013336 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154790 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12178, Sbi_jg25593, Sbi_jg43110, Sbi_jg45705 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11547 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001928 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35929, Sgl41239 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000087, gene:ENSEOMG00000002820 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007320, CQ.Regalona.r1.6BG0007910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224440 |
| Apiaceae | Apium graveolens | 2 | Ag3G02628, Ag3G02630 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G013500, COCNU_14G012780 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712049, gene-LOC103720099 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G03629 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G27090.1, AT3G24690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007745m.g.v1.0, Thhalv10029189m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g21690.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g019030.2N, BniB03g031340.2N, BniB08g037800.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0011 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0001 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5815 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.132, evm.TU.LG03.179 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027017 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01168 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1000, AH03.1394, BH01.1142, CH01.1192, CH03.1642 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0221050, gene-QOZ80_3BG0266210 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.1HG0072810.1, HORVU.MOREX.r3.1HG0076750.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003251 |
| Poaceae | Oryza coarctata | 2 | Oco05G020560, Oco06G021310 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g13550.1, LOC_Os03g48260.1, LOC_Os11g11180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G121500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104936 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G026050, Chr07G024950, Chr12G029330 |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G057000, Tel4E01G057100, Tel4E01G065300 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3BG042410, gene_TRIDC4AG040450 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G258800.2, TraesCS4A02G280000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb053410_P001, Zm00001eb217180_P003 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14676, nbis-gene-15781, nbis-gene-38476 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3048, Zma_g740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.311, evm.TU.LG21.16 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.683, evm.TU.Scaffold_17_RagTag.318 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23011, nbisL1-mrna-26867, nbisL1-mrna-28183 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-331, nbisL1-mrna-7461 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14843, nbisL1-mrna-15700 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.361, evm.TU.utg000013l.217 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002697, Maker00006401 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11302, nbisL1-mrna-7127 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15790, nbisL1-mrna-17819 |
| Salicaceae | Populus euphratica | 2 | populus_peu07786, populus_peu21851 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615018, gene-LOC132626130 |
| Solanaceae | Solanum chilense | 1 | SOLCI005208800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007956, gene-LOC107020945 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13627 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G3253, TC03G0695, TC06G1161 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09830.v3.1 |