Basic Information
Locus ID:
CQ.Regalona.r1.6BG0005900
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 8135773 | 8140018 | - | CQ.Regalona.r1.6BG0005900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 51,052.34 Da | 41.33 | 118.27 | 0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 91 | 443 | 1.4377E-41 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 28 | 404 | 1.9E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 83 | 449 | 3.53E-30 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 58 | 448 | 5.4E-33 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 27 | 450 | 11.058469 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 328 | 349 | 5.9E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 114 | 138 | 5.9E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 388 | 411 | 5.9E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021727460.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| P02982 | Tetracycline resistance protein, class A OS=Escherichia coli OX=562 GN=tetA PE=3 SV=2 | 0 | |
| TrEMBL | A0A803LJ67 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology