Basic Information
Locus ID:
CQ.Regalona.r1.6BG0005370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DNA (cytosine-5-)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 7444481 | 7450652 | - | CQ.Regalona.r1.6BG0005370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 68,636.86 Da | 53.62 | 78.34 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 473 | 588 | 1.6E-10 | IPR001525 |
| SUPERFAMILY | SSF46934 | UBA-like | 62 | 108 | 8.71E-5 | IPR009060 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 280 | 464 | 2.08E-20 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 469 | 591 | 9.57E-20 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 273 | 372 | 1.3E-8 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 467 | 601 | 2.8E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 64 | 116 | 7.1E-7 | - |
| SMART | SM00165 | uba_6 | 165 | 204 | 0.41 | IPR015940 |
| SMART | SM00165 | uba_6 | 76 | 114 | 3.0 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 74 | 115 | 10.113087 | IPR015940 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 473 | 601 | 20.837156 | IPR001525 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 163 | 205 | 8.739552 | IPR015940 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 272 | 597 | 124.158798 | IPR030380 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 235 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14620.1 | domains rearranged methyltransferase 2. A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues. | 0 |
| RefSeq | XP_021727470.1 | DNA (cytosine-5)-methyltransferase DRM2-like [Chenopodium quinoa] | 0 |
| Q9M548 | DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana OX=3702 GN=DRM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LJC0 | DNA (Cytosine-5)-methyltransferase DRM2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology