Basic Information
Locus ID:
CQ.Regalona.r1.6BG0003550
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 4823228 | 4830313 | - | CQ.Regalona.r1.6BG0003550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 166,237.52 Da | 40.04 | 108.51 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1225 | 1446 | 1.06166E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 912 | 1202 | 9.64466E-69 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 608 | 813 | 3.61077E-95 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 296 | 583 | 4.5244E-84 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1244 | 1393 | 3.0E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 634 | 765 | 7.1E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 296 | 562 | 1.3E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 917 | 1152 | 2.5E-26 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 827 | 1.33E-48 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 288 | 590 | 3.92E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1221 | 1454 | 2.48E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 912 | 1209 | 1.57E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 595 | 8.5E-42 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 877 | 1208 | 2.7E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1210 | 1464 | 8.6E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 860 | 1.2E-65 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1253 | 1445 | 9.2E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 639 | 813 | 4.8E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 296 | 575 | 31.219088 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 608 | 836 | 19.474579 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1227 | 1462 | 16.733498 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 914 | 1190 | 31.264721 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 738 | 752 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology