Basic Information
Locus ID:
CQ.Regalona.r1.6BG0002890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 3989122 | 3992899 | + | CQ.Regalona.r1.6BG0002890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 48,859.51 Da | 39.99 | 68.15 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 370 | 410 | 8.9E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 96 | 157 | 4.91E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 164 | 285 | 1.44E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 365 | 416 | 3.14E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 361 | 414 | 2.1E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 148 | 297 | 3.1E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 368 | 410 | 10.928584 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 454 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021746612.1 | F-box protein At1g67340 [Chenopodium quinoa] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L182 | MYND-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology