Basic Information
Locus ID:
CQ.Regalona.r1.6BG0001840
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Pectate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 2684133 | 2694329 | - | CQ.Regalona.r1.6BG0001840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 95,613.21 Da | 46.11 | 89.95 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 27 | 136 | 4.98712E-21 | - |
| Pfam | PF00544 | Pectate lyase | 579 | 762 | 1.7E-21 | IPR002022 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 3 | 323 | 2.3E-25 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 61 | 93 | 5.2E-5 | IPR002934 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 6 | 179 | 5.72E-38 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 245 | 324 | 2.67E-13 | - |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 496 | 806 | 2.83E-91 | IPR011050 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 329 | 443 | 4.71E-15 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 20 | 176 | 6.5E-66 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 2 | 322 | 6.5E-66 | - |
| Gene3D | G3DSA:2.160.20.10 | - | 495 | 837 | 2.3E-105 | IPR012334 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 329 | 434 | 7.8E-6 | - |
| SMART | SM00656 | amb_all | 571 | 768 | 5.7E-99 | IPR002022 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 723 | 742 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 579 | 595 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 542 | 567 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 643 | 664 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 745 | 764 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 518 | 535 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 815 | 838 | 5.3E-72 | IPR018082 |
| PRINTS | PR00807 | Pollen allergen Amb family signature | 786 | 810 | 5.3E-72 | IPR018082 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14420.1 | Pectate lyase family protein. | 0 |
| RefSeq | XP_021722963.1 | nuclear poly(A) polymerase 3-like [Chenopodium quinoa] | 0 |
| P40973 | Pectate lyase OS=Lilium longiflorum OX=4690 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L1J4 | Pectate lyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology