Basic Information
Locus ID:
CQ.Regalona.r1.6AG0025300
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 68729507 | 68783058 | + | CQ.Regalona.r1.6AG0025300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 245,580.94 Da | 42.91 | 90.92 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 781 | 865 | 0.00162643 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 382 | 524 | 3.3E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 133 | 300 | 2.7E-13 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1278 | 1569 | 9.7E-13 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 768 | 884 | 8.73E-5 | IPR035892 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1647 | 1663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1636 | 1663 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_021735027.1 | uncharacterized protein LOC110701710 isoform X1 [Chenopodium quinoa] | 0 |
| Q54LN2 | Intermembrane lipid transfer protein vps13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology