Basic Information
Locus ID:
CQ.Regalona.r1.6AG0023860
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 67107664 | 67115025 | + | CQ.Regalona.r1.6AG0023860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 41,621.05 Da | 44.60 | 91.00 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 39 | 87 | 2.32373E-16 | - |
| Pfam | PF12906 | RING-variant domain | 39 | 86 | 5.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 91 | 3.3E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 99 | 7.9E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 38 | 87 | 1.1E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 31 | 93 | 20.699759 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021751969.1 | uncharacterized protein LOC110717549 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803KSN7 | RING-CH-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology