Basic Information
Locus ID:
CQ.Regalona.r1.6AG0021040
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
HPR
Description:
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 64002874 | 64003981 | + | CQ.Regalona.r1.6AG0021040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 15,305.23 Da | 45.28 | 93.71 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 1 | 97 | 1.09346E-47 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 83 | 130 | 4.2E-27 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 3 | 41 | 1.2E-16 | IPR016073 |
| SUPERFAMILY | SSF54695 | POZ domain | 1 | 42 | 8.79E-13 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 55 | 130 | 1.57E-31 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 132 | 2.8E-59 | IPR011333 |
| SMART | SM00512 | skp1_3 | 1 | 82 | 6.2E-27 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 132 | 1.9E-56 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_021756180.1 | SKP1-like protein 1A [Chenopodium quinoa] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LIV1 | SKP1-like protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology