Basic Information
Locus ID:
CQ.Regalona.r1.6AG0019940
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 62731950 | 62744352 | - | CQ.Regalona.r1.6AG0019940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 113,939.13 Da | 40.04 | 81.43 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 3.23897E-168 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 896 | 1006 | 1.0E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 814 | 2.9E-50 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 3.5E-89 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 7.2E-21 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 452 | 5.89E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 355 | 6.67E-108 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1009 | 7.53E-144 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.4E-29 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 468 | 579 | 2.8E-24 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 4.6E-117 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 601 | 862 | 2.1E-95 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 457 | 6.7E-21 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 883 | 1009 | 1.1E-35 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 2.4E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_021727587.1 | alpha-mannosidase-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MHN2 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology