Basic Information
Locus ID:
CQ.Regalona.r1.6AG0018230
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 60622795 | 60635288 | - | CQ.Regalona.r1.6AG0018230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 57,378.00 Da | 55.13 | 61.52 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 135 | 187 | 1.03516E-24 | - |
| Pfam | PF12315 | Protein DA1 | 284 | 500 | 1.1E-105 | IPR022087 |
| Pfam | PF00412 | LIM domain | 135 | 190 | 3.6E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 127 | 160 | 4.76E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 161 | 216 | 7.45E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 131 | 193 | 1.4E-14 | - |
| SMART | SM00132 | lim_4 | 134 | 186 | 5.5E-13 | IPR001781 |
| SMART | SM00726 | uim | 83 | 102 | 0.38 | IPR003903 |
| SMART | SM00726 | uim | 45 | 64 | 1.9 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 133 | 193 | 11.998899 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 48 | 64 | 8.8387 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 83 | 102 | 9.255892 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 135 | 169 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 48 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021718530.1 | protein DA1-related 1-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology