Basic Information
Locus ID:
CQ.Regalona.r1.6AG0017370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 59471661 | 59474097 | - | CQ.Regalona.r1.6AG0017370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 30,073.68 Da | 53.59 | 105.13 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 44 | 96 | 4.9E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 100 | 8.48E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 135 | 8.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 98 | 0.0031 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 99 | 10.173057 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 63 | 72 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021718428.1 | uncharacterized protein LOC110686149 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803L7W0 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology