Basic Information
Locus ID:
CQ.Regalona.r1.6AG0015580
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 56370434 | 56377150 | - | CQ.Regalona.r1.6AG0015580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 50,486.83 Da | 47.50 | 112.18 | 0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 30 | 433 | 4.27979E-59 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 73 | 394 | 1.3E-26 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 73 | 441 | 1.31E-40 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 59 | 434 | 4.6E-39 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 30 | 440 | 11.653975 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 88 | 104 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 318 | 339 | 5.2E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 101 | 125 | 5.2E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 378 | 401 | 5.2E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 70 | 89 | 5.2E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021718248.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803KV97 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology