Basic Information
Locus ID:
CQ.Regalona.r1.6AG0014000
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 51835781 | 51849274 | + | CQ.Regalona.r1.6AG0014000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 139,326.08 Da | 51.13 | 79.26 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 659 | 815 | 5.03349E-29 | - |
| CDD | cd12108 | Hr-like | 52 | 178 | 4.72386E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1126 | 1169 | 5.77079E-16 | - |
| CDD | cd12108 | Hr-like | 311 | 439 | 3.06598E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 655 | 816 | 3.6E-9 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 998 | 1073 | 9.9E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 54 | 180 | 9.8E-12 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1174 | 1231 | 4.8E-24 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 989 | 1054 | 2.09E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1126 | 1172 | 8.39E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1064 | 1120 | 7.32E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1198 | 1239 | 3.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1171 | 8.0E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 48 | 198 | 3.8E-32 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 886 | 3.8E-26 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 310 | 458 | 1.2E-19 | - |
| SMART | SM00184 | ring_2 | 1127 | 1168 | 8.0E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 991 | 1060 | 25.774536 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1063 | 1126 | 29.743618 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1127 | 1169 | 11.146755 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 574 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021749708.1 | zinc finger protein BRUTUS-like [Chenopodium quinoa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MYM5 | Zinc finger protein BRUTUS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology