Basic Information
Locus ID:
CQ.Regalona.r1.6AG0012830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U4 U6.U5 tri-snRNP-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 48326095 | 48331237 | + | CQ.Regalona.r1.6AG0012830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 54,077.46 Da | 49.26 | 86.26 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02669 | Peptidase_C19M | 18 | 458 | 0.0 | IPR033809 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 137 | 457 | 1.6E-40 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 36 | 96 | 7.8E-11 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 14 | 109 | 5.42E-19 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 134 | 458 | 1.04E-56 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 104 | 6.7E-32 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 106 | 461 | 5.9E-87 | - |
| SMART | SM00290 | Zf_UBP_1 | 35 | 84 | 6.6E-11 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 137 | 460 | 33.751671 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 34 | 95 | 15.843866 | IPR001607 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22350.1 | Ubiquitin C-terminal hydrolases superfamily protein. | 0 |
| RefSeq | XP_021727137.1 | U4/U6.U5 tri-snRNP-associated protein 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q53GS9 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Homo sapiens OX=9606 GN=USP39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LJK7 | Ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20469 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4356 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2687, Sbi_jg28338 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7137 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011579 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41702, Sgl46502 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010785, gene:ENSEOMG00000021103 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0012830, CQ.Regalona.r1.6AG0022840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30166290, pistato.v30168420 |
| Apiaceae | Apium graveolens | 2 | Ag6G00188, Ag9G00070 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012350, scaffold005311G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719061 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2092.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G03405 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G22285.1, AT4G22350.2, AT4G22410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024723m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g20480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g079820.2N, BniB05g014740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2088 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g08090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0249s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g20960 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7734 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1143 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039099 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00527 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2756, BH06.2552, CH06.2854 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0548730, gene-QOZ80_6BG0502330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028033 |
| Poaceae | Oryza coarctata | 2 | Oco17G004510, Oco18G004550 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g24250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G236000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402311, Pt_Chr0404151 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G010080, Chr10G020710, Chr11G001930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G056100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG079010, gene_TRIDC4AG068100 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G462100.1, TraesCS7A02G027300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225610_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40610, nbis-gene-9708 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31026, Zma_g33283 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1960, evm.TU.LG14.1139, evm.TU.LG19.531 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g19980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1494 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19989, nbisL1-mrna-20307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20613 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13434 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.185 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011706 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14926 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12179 |
| Salicaceae | Populus euphratica | 2 | populus_peu10562, populus_peu26470 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621473, gene-LOC132642138 |
| Solanaceae | Solanum chilense | 1 | SOLCI006287900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011965 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30448_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0180 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08240.v3.1 |