Basic Information
Locus ID:
CQ.Regalona.r1.6AG0008760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 19545666 | 19562044 | - | CQ.Regalona.r1.6AG0008760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 116,985.47 Da | 33.48 | 83.72 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 348 | 2.23826E-137 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 385 | 1.4E-62 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 390 | 482 | 3.3E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 679 | 892 | 4.0E-46 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 34 | 282 | 1.48E-58 | IPR011330 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 305 | 386 | 1.89E-20 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 512 | 1031 | 1.57E-119 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 389 | 483 | 1.34E-28 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 674 | 920 | 3.4E-86 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 354 | 432 | 5.8E-29 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 353 | 1.7E-87 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 940 | 1037 | 6.8E-18 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 433 | 488 | 1.1E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 515 | 634 | 1.8E-25 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 390 | 464 | 1.9E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021762464.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MZJ0 | Alpha-mannosidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology