Basic Information
Locus ID:
CQ.Regalona.r1.6AG0007720
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 15344540 | 15351167 | + | CQ.Regalona.r1.6AG0007720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 76,754.53 Da | 29.90 | 76.99 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 52 | 332 | 6.21309E-75 | - |
| CDD | cd10317 | RGL4_C | 480 | 668 | 8.19039E-50 | - |
| CDD | cd10316 | RGL4_M | 372 | 467 | 2.29597E-35 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 395 | 464 | 1.3E-24 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 56 | 241 | 4.4E-62 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 478 | 667 | 3.4E-51 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 369 | 465 | 1.2E-13 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 476 | 668 | 7.31E-45 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 54 | 332 | 1.41E-10 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 475 | 668 | 7.9E-18 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 52 | 338 | 2.1E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 369 | 466 | 1.7E-13 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021731282.1 | uncharacterized protein LOC110698188 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MAW7 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology