Basic Information
Locus ID:
CQ.Regalona.r1.6AG0007710
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 15270332 | 15286454 | + | CQ.Regalona.r1.6AG0007710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 77,762.55 Da | 34.99 | 76.15 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 42 | 330 | 1.08278E-71 | - |
| CDD | cd10316 | RGL4_M | 368 | 467 | 3.34847E-29 | IPR029413 |
| CDD | cd10317 | RGL4_C | 479 | 667 | 1.8878E-51 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 392 | 463 | 3.4E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 34 | 237 | 8.5E-73 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 477 | 665 | 1.9E-50 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 49 | 330 | 1.91E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 409 | 466 | 3.92E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 474 | 667 | 1.06E-46 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 42 | 338 | 2.2E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 475 | 667 | 9.9E-17 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021747845.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MAW9 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology