Basic Information
Locus ID:
CQ.Regalona.r1.6AG0006370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 10185645 | 10189847 | - | CQ.Regalona.r1.6AG0006370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 93,491.02 Da | 38.00 | 107.73 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 593 | 813 | 1.20024E-115 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 6 | 183 | 2.56307E-104 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 285 | 539 | 1.92447E-67 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 612 | 759 | 5.1E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 285 | 539 | 7.3E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 5 | 135 | 7.2E-16 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 272 | 538 | 4.71E-43 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 6 | 204 | 1.98E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 587 | 821 | 2.86E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 578 | 831 | 1.5E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 230 | 1.3E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 251 | 550 | 3.0E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 621 | 813 | 5.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 10 | 183 | 1.8E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 286 | 539 | 31.023243 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 597 | 829 | 17.367081 | IPR003439 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 30 | 5.0 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1 | 206 | 17.940641 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 108 | 122 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021855160.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7W6 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_101510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology