Basic Information
Locus ID:
CQ.Regalona.r1.6AG0005450
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
to protein kinase NpkA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6A | 8477147 | 8477401 | + | CQ.Regalona.r1.6AG0005450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 6,766.97 Da | 16.61 | 108.39 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 2 | 54 | 4.6E-15 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 56 | 1.75E-19 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 59 | 9.1E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 62 | 17.220171 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 2 | 14 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14780.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021741443.1 | LOW QUALITY PROTEIN: serine/threonine-protein kinase HT1-like [Chenopodium quinoa] | 0 |
| Q9SSA4 | Serine/threonine-protein kinase 54 OS=Arabidopsis thaliana OX=3702 GN=CBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L0I5 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah013551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005450, CQ.Regalona.r1.6BG0005700 |
| Brassicaceae | Brassica nigra | 1 | BniB08g053840.2N |