Basic Information
Locus ID:
CQ.Regalona.r1.5BG0029220
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 79151086 | 79153897 | - | CQ.Regalona.r1.5BG0029220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 51,277.98 Da | 54.44 | 74.59 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 110 | 425 | 1.3E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 67 | 461 | 1.47E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 61 | 455 | 5.1E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 289 | 309 | 2500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 239 | 265 | 28.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 319 | 340 | 21.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 348 | 369 | 1800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 266 | 287 | 550.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 296 | 309 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021768653.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M7B2 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology