Basic Information
Locus ID:
CQ.Regalona.r1.5BG0026520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 76022238 | 76025287 | - | CQ.Regalona.r1.5BG0026520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 55,257.60 Da | 40.36 | 73.93 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 107 | 138 | 3.2E-5 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 177 | 243 | 2.7E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 250 | 9.18E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 186 | 8.83E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 239 | 476 | 1.4E-44 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 192 | 3.4E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 177 | 243 | 4.7E-19 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 157 | 10.128798 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 103 | 329 | 29.09869 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021762673.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ4 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology