Basic Information
Locus ID:
CQ.Regalona.r1.5BG0026510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 76015858 | 76017695 | - | CQ.Regalona.r1.5BG0026510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 59,056.82 Da | 53.11 | 67.78 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 131 | 181 | 2.23627E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 284 | 326 | 7.1E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 200 | 262 | 3.3E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 212 | 8.83E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 269 | 8.3E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 281 | 329 | 2.53E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 258 | 508 | 6.2E-76 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 212 | 1.1E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 266 | 336 | 0.29 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 200 | 262 | 4.2E-18 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 127 | 340 | 44.739914 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 177 | 8.786275 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021764388.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ5 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology