Basic Information
Locus ID:
CQ.Regalona.r1.5BG0025170
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PHD finger protein ALFIN-LIKE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 74776837 | 74784838 | + | CQ.Regalona.r1.5BG0025170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 61,490.65 Da | 39.68 | 85.71 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12165 | Alfin | 6 | 131 | 1.4E-50 | IPR021998 |
| Pfam | PF07734 | F-box associated | 360 | 477 | 1.8E-6 | IPR006527 |
| Pfam | PF00646 | F-box domain | 146 | 186 | 1.8E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 144 | 211 | 1.31E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 142 | 198 | 5.1E-8 | - |
| SMART | SM00256 | fbox_2 | 147 | 188 | 2.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 246 | 480 | 3.0E-26 | IPR017451 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26210.1 | alfin-like 4. AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_021733536.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| O81488 | PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803L8F1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13621, gene_19473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000520 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55128, Sgl60381 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006337, gene:ENSEOMG00000020306 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023690, CQ.Regalona.r1.5BG0025170 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2416 |