Basic Information
Locus ID:
CQ.Regalona.r1.5BG0025000
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 74632447 | 74638596 | - | CQ.Regalona.r1.5BG0025000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 50,482.07 Da | 50.01 | 73.64 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 347 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 42 | 345 | 5.2E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 399 | 1.63E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 413 | 7.5E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 447 | 3.3E-204 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 188 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 282 | 292 | 1.5E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 197 | 212 | 1.5E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 243 | 256 | 3.3E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 184 | 200 | 3.3E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 260 | 278 | 3.3E-31 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 44 | 61 | 3.3E-31 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 450 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021733555.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology