Basic Information
Locus ID:
CQ.Regalona.r1.5BG0024930
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 74590670 | 74594385 | - | CQ.Regalona.r1.5BG0024930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 69,331.45 Da | 40.57 | 78.83 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF117281 | Kelch motif | 131 | 214 | 9.68E-5 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 90 | 3.53E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 57 | 3.1E-5 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 2.3E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 132 | 252 | 1.5E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21120.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734127.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9LJC0 | Putative F-box protein At3g21120 OS=Arabidopsis thaliana OX=3702 GN=At3g21120 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803L8H5 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah000544, Ah000545, Ah000548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017365 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... |