halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.5BG0023870

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: Agamous-like MADS-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5B	73475005	73478207	+	CQ.Regalona.r1.5BG0023870

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.50	58,204.42 Da	39.19	85.80	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00265	MADS_MEF2_like	14	85	7.17356E-31	IPR033896
Pfam	PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)	22	69	1.1E-23	IPR002100
Pfam	PF08268	F-box associated domain	335	408	3.9E-5	IPR013187
SUPERFAMILY	SSF55455	SRF-like	14	87	1.44E-26	IPR036879
Gene3D	G3DSA:6.10.140.920	-	103	189	3.3E-5	-
Gene3D	G3DSA:3.40.1810.10	-	25	95	5.8E-27	IPR036879
SMART	SM00432	madsneu2	13	72	3.7E-29	IPR002100
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	215	439	4.4E-18	IPR017451
ProSiteProfiles	PS50066	MADS-box domain profile.	13	73	23.604641	IPR002100
PRINTS	PR00404	MADS domain signature	35	50	1.2E-16	IPR002100
PRINTS	PR00404	MADS domain signature	50	71	1.2E-16	IPR002100
PRINTS	PR00404	MADS domain signature	15	35	1.2E-16	IPR002100
MobiDBLite	mobidb-lite	consensus disorder prediction	1	28	-	-
Coils	Coil	Coil	155	178	-	-

Gene Ontology

Biological Process:

GO:0045944 (positive regulation of transcription by RNA polymerase II)

Molecular Function:

GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding) GO:0003677 (DNA binding) GO:0046983 (protein dimerization activity)

KEGG Pathway

KO Term:

K04454 (MADS-box transcription enhancer factor 2C)

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60440.1	AGAMOUS-like 62. AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.
RefSeq	XP_021734069.1	agamous-like MADS-box protein AGL62 [Chenopodium quinoa]
Swiss-Prot	Q9FKK2	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1
TrEMBL	A0A803L8R2	MADS-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	29	gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... gene_12833, gene_13687, gene_13691, gene_13692, gene_13693, gene_13694, gene_13696, gene_13697, gene_13698, gene_13699, gene_13716, gene_13748, gene_13894, gene_13895, gene_19546, gene_19554, gene_19555, gene_22758, gene_5204, gene_7945, gene_7946, gene_8690, gene_8691, gene_8693
Amaranthaceae	Atriplex hortensis	24	Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... Ah000696, Ah000697, Ah000700, Ah000701, Ah000705, Ah001044, Ah001150, Ah001198, Ah001199, Ah001205, Ah001207, Ah001265, Ah018107, Ah024122, Ah030707, Ah030865, Ah030866, Ah035819
Amaranthaceae	Beta vulgaris	1	BVRB_5g116570
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... Sbi_jg58760, Sbi_jg58781
Amaranthaceae	Salicornia europaea	3	Seu_jg16516, Seu_jg28633, Seu_jg28651
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... GOSA_00015001
Amaranthaceae	Suaeda glauca	31	Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... Sgl12280, Sgl12356, Sgl16239, Sgl17326, Sgl17464, Sgl17510, Sgl17636, Sgl24281, Sgl29456, Sgl34160, Sgl34161, Sgl34162, Sgl39794, Sgl45422, Sgl45476, Sgl55268, Sgl55270, Sgl55271, Sgl55289, Sgl60533, Sgl60535, Sgl60555, Sgl79945, Sgl82377, Sgl82378
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... gene:ENSEOMG00000006320, gene:ENSEOMG00000007498, gene:ENSEOMG00000008056, gene:ENSEOMG00000011411, gene:ENSEOMG00000015361, gene:ENSEOMG00000015503, gene:ENSEOMG00000023015, gene:ENSEOMG00000023968, gene:ENSEOMG00000024282, gene:ENSEOMG00000024366, gene:ENSEOMG00000024685, gene:ENSEOMG00000024870, gene:ENSEOMG00000025823, gene:ENSEOMG00000026035, gene:ENSEOMG00000026127, gene:ENSEOMG00000033242
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... CQ.Regalona.r1.5AG0022160, CQ.Regalona.r1.5AG0022370, CQ.Regalona.r1.5AG0022400, CQ.Regalona.r1.5AG0022420, CQ.Regalona.r1.5AG0022430, CQ.Regalona.r1.5AG0022480, CQ.Regalona.r1.5AG0022490, CQ.Regalona.r1.5AG0022500, CQ.Regalona.r1.5BG0020380, CQ.Regalona.r1.5BG0023570, CQ.Regalona.r1.5BG0023770, CQ.Regalona.r1.5BG0023800, CQ.Regalona.r1.5BG0023810, CQ.Regalona.r1.5BG0023850, CQ.Regalona.r1.5BG0023860, CQ.Regalona.r1.5BG0023870, CQ.Regalona.r1.7AG0011730, CQ.Regalona.r1.8BG0006100, CQ.Regalona.r1.8BG0013090, CQ.Regalona.r1.8BG0014890, CQ.Regalona.r1.8BG0015780
Plumbaginaceae	Limonium bicolor	2	Lb2G10874, Lb3G17282
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... evm.TU.LG01.2541, evm.TU.LG01.2543, evm.TU.LG01.2544, evm.TU.LG01.2545, evm.TU.LG02.884, evm.TU.LG14.1673, evm.TU.LG14.1674, evm.TU.LG14.1675, evm.TU.LG14.1680, evm.TU.LG14.1681, evm.TU.LG14.1682, evm.TU.LG14.1683