Basic Information
Locus ID:
CQ.Regalona.r1.5BG0023570
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 73163587 | 73166205 | - | CQ.Regalona.r1.5BG0023570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 46,195.89 Da | 42.38 | 88.28 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 219 | 327 | 2.3E-8 | IPR006527 |
| Pfam | PF00646 | F-box domain | 15 | 49 | 1.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 59 | 3.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 77 | 1.7E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 53 | 3.1E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 318 | 1.0E-21 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021733689.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R2Q0 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 29 | gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... |
| Amaranthaceae | Atriplex hortensis | 24 | Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116570 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16516, Seu_jg28633, Seu_jg28651 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... |
| Amaranthaceae | Suaeda glauca | 31 | Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... |
| Amaranthaceae | Chenopodium album | 18 | gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... |
| Amaranthaceae | Chenopodium quinoa | 23 | CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10874, Lb3G17282 |
| Portulacaceae | Portulaca oleracea | 15 | evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... |