Basic Information
Locus ID:
CQ.Regalona.r1.5BG0023560
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 73159928 | 73160455 | - | CQ.Regalona.r1.5BG0023560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.98 | 20,903.98 Da | 47.27 | 77.94 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 20 | 56 | 2.5E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 96 | 1.27E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 58 | 9.2E-10 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 2.8E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 66 | 12.968236 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734160.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A833XM12 | F-box domain-containing protein OS=Juglans regia OX=51240 GN=F2P56_008338 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_13562, gene_18928, gene_18929, gene_19416, gene_4730 ... |
| Amaranthaceae | Atriplex hortensis | 7 | Ah000401, Ah001137, Ah001139, Ah014368, Ah028400, Ah028402 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30749, Sbi_jg58515 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg20870, Seu_jg28387, Seu_jg28388, Seu_jg28403 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010129 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0023560, CQ.Regalona.r1.8BG0020740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1040, evm.TU.LG09.933 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644015 |