Basic Information
Locus ID:
CQ.Regalona.r1.5BG0023400
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 72819913 | 72834498 | - | CQ.Regalona.r1.5BG0023400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 250,276.25 Da | 36.40 | 106.26 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 1412 | 1615 | 4.8549E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 403 | 696 | 1.61087E-86 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 719 | 924 | 4.87089E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1092 | 1386 | 4.16188E-83 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 105 | 305 | 1.93707E-104 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1717 | 2010 | 3.6147E-84 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2011 | 2223 | 1.03653E-114 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 403 | 651 | 2.3E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 2022 | 2170 | 7.8E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1095 | 1363 | 6.4E-18 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1433 | 1567 | 1.4E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 738 | 886 | 3.0E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 126 | 260 | 4.0E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1717 | 1965 | 2.0E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1081 | 1391 | 1.44E-25 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2008 | 2237 | 1.41E-63 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 710 | 917 | 2.5E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1410 | 1639 | 4.39E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1716 | 2010 | 3.01E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 401 | 703 | 3.01E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 117 | 306 | 3.07E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 91 | 322 | 9.0E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1405 | 1664 | 3.4E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 366 | 702 | 7.7E-63 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1681 | 2010 | 5.6E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1080 | 1394 | 9.8E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 2011 | 2251 | 2.2E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 90 | 5.8E-6 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 704 | 958 | 2.1E-71 | IPR027417 |
| SMART | SM00382 | AAA_5 | 135 | 308 | 5.1E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 747 | 937 | 5.3E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2031 | 2222 | 3.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1442 | 1615 | 1.7E-13 | IPR003593 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | 6.0 | - |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 107 | 331 | 19.961439 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1718 | 1998 | 31.665916 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1091 | 1378 | 28.038046 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 404 | 684 | 36.706528 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1412 | 1638 | 22.082277 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 723 | 956 | 15.399637 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2007 | 2239 | 17.18701 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1540 | 1554 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 233 | 247 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021855160.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6E7 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_101510 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology